| 1 |
Introduction/Sequence Comparison and Dynamic Programming (PDF - 2.6 MB) |
MY |
| 2 |
Multiple Sequence Alignments I (PDF) |
MY |
| 3 |
Multiple Sequence Alignments II (PDF) |
MY |
| 4 |
Phylogenetic Analysis (PDF) |
MY |
| 5 |
Literature Discussion (PDF) |
MY |
| 6 |
Genome Sequencing and DNA Sequence Analysis (PDF) |
CB |
| 7 |
DNA Sequence Comparison and Alignment (PDF) |
CB |
| 8 |
DNA Motif Modeling and Discovery (PDF) |
CB |
| 9 |
Markov and Hidden Markov Models for DNA Sequences (PDF) |
CB |
| 10 |
DNA Sequence Evolution (PDF) |
CB |
| 11 |
RNA Secondary Structure Prediction (PDF) |
CB |
| 12 |
Literature Discussion on Predicting the Functions of DNA/RNA Sequences |
CB |
| 13 |
Midterm Exam – in class – Protein and DNA Sequence Analysis |
|
| 14 |
Protein Secondary Structure Prediction (PDF) |
MY |
| 15 |
Introduction to Protein Structure and Classification (PDF - 1.8 MB) |
AK |
| 16 |
Comparing Protein Structures
Molecular Modeling: Methods and Applications (PDF) |
AK |
| 17 |
Using Computational Methods to Analyze, Predict, and Design Protein Sequences and Structures
Solving Structures using X-ray Crystallographpy and NMR (PDF) |
AK |
| 18 |
Solving Structures using X-ray Crystallographpy and NMR (cont.)
Homology Modeling (PDF) |
AK |
| 19 |
Methods for Protein Structure Prediction: Homology Modeling and Fold Recognition (PDF) |
AK |
| 20 |
Threading and ab initio Structure Prediction
Computational Protein Design (PDF) |
AK |
| 21 |
Introduction to Systems Biology |
MY |
| 22 |
Feedback Systems and Coupled Differential Equations |
MY |
| 23 |
DNA Microarrays and Clustering (PDF - 1.8 MB) |
CB |
| 24 |
Literature Discussion on DNA Microarrays and Clustering |
CB |
| 25 |
Computational Annotation of the Proteome (PDF) |
AK |
| 26 |
Literature Discussion on Computational Annotation of the Proteome |
AK |